SNP Profiles of BE 10   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
7._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
8._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
9._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
10._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
11._GC-08-090-2-13
AAAATTAAGGGGCCCCCCCCGGTTCCTT
12._BE_10
AAAATTAA____CCCCGG_CC_
13._BE_10
AAAATTAA____CCCCGG_CC_
14._BE_10
AAAATTAA____CCCCGG_CC_
15._BE_10
AAAATTAA____CCCCGG_CC_
16._BE_10
AAAATTAA____CCCCGG_CC_
17._BE_10
AAAATTAA____CCCCGG_CC_
18._BE_10
AAAATTAA____CCCCGG_CC_
19._BE_10
AAAATTAA____CCCCGG_CC_
20._BE_10
AAAATTAA____CCCCGG_CC_
21._BE_10
AAAATTAA____CCCCGG_CC_
22._BE_10
AAAATTAA____CCCCGG_CC_
23._BE_10
AAAATTAA____CCCCGG_CC_
24._BE_10
AA_TTAA____CCCCGG_CC_
25._GC-08-90-2-13
AAAA_AAGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
2._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
3._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
4._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
5._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
6._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
7._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
8._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
9._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
10._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
11._GC-08-090-2-13
AACCAAGGCCGGTTAATTGGTTAACCGG
12._BE_10
__AA__GG____TTAA_GG
13._BE_10
__AA__GG____TTAA_GG
14._BE_10
__AA__GG____TTAA_GG
15._BE_10
__AA__GG____TTAA_GG
16._BE_10
__AA__GG____TTAA_GG
17._BE_10
__AA__GG____TTAA_GG
18._BE_10
__AA__GG____TTAA_GG
19._BE_10
__AA__GG____TTAA_GG
20._BE_10
__AA__GG____TTAA_GG
21._BE_10
__AA__GG____TTAA_GG
22._BE_10
__AA__GG____TTAA_GG
23._BE_10
__AA__GG____TTAA_GG
24._BE_10
__AA_______TTAA_GG
25._GC-08-90-2-13
TTCCAACC_GGAAGGAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGCCCCGGTTGGTTAATTAACC
1._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
2._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
3._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
4._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
5._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
6._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
7._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
8._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
9._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
10._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
11._GC-08-090-2-13
AATTGGGGCCCCGGTTGGTTAATTAACC
12._BE_10
AA___CC_GGTT__AA___
13._BE_10
AA___CC_GGTT__AA___
14._BE_10
AA___CC_GGTT__AA___
15._BE_10
AA___CC_GGTT__AA___
16._BE_10
AA___CC_GGTT__AA___
17._BE_10
AA___CC_GGTT__AA___
18._BE_10
AA___CC_GGTT__AA___
19._BE_10
AA___CC_GGTT__AA___
20._BE_10
AA___CC_GGTT__AA___
21._BE_10
AA___CC_GGTT__AA___
22._BE_10
AA___CC_GGTT__AA___
23._BE_10
AA___CC_GGTT__AA___
24._BE_10
AA___CC_GGTT__AA___
25._GC-08-90-2-13
AAAACCGGCCCCGGAACCAAAAAAAAGG
 4344454647484950515253545556
_Input profile
GGTTCCGGAACCCCGGGGTTTTTTTTAA
1._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
2._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
3._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
4._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
5._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
6._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
7._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
8._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
9._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
10._GC-08-090-2-13
GGTTCCGG_CCCCGGGGTTTTTTTTAA
11._GC-08-090-2-13
GGTTCCGGAACCCCGGGGTTTTTTTTAA
12._BE_10
__CC________TT__
13._BE_10
__CC________TT__
14._BE_10
__CC________TT__
15._BE_10
__CC________TT__
16._BE_10
__CC________TT__
17._BE_10
__CC________TT__
18._BE_10
__CC________TT__
19._BE_10
__CC________TT__
20._BE_10
__CC________TT__
21._BE_10
__CC________TT__
22._BE_10
__CC________TT__
23._BE_10
__CC________TT__
24._BE_10
__CC________TT__
25._GC-08-90-2-13
CC_GGGGAAGG_GGGGAAAAAAAAAA
 5758596061626364656667686970
_Input profile
CCTTCCAAGGGGCCAATTGGGGTTCCGG
1._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
2._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
3._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
4._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
5._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
6._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
7._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
8._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
9._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
10._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
11._GC-08-090-2-13
CCTTCCAAGGGGCCAATTGGGGTTCCGG
12._BE_10
CC_CCAAGG_CCAATTGG___GG
13._BE_10
CC_CCAAGG_CCAATTGG___GG
14._BE_10
CC_CCAAGG_CCAATTGG___GG
15._BE_10
CC_CCAAGG_CCAATTGG___GG
16._BE_10
CC_CCAAGG_CCAATTGG___GG
17._BE_10
CC_CCAAGG_CCAATTGG___GG
18._BE_10
CC_CCAAGG_CCAATTGG___GG
19._BE_10
CC_CCAAGG_CCAATTGG___GG
20._BE_10
CC_CCAAGG_CCAATTGG___GG
21._BE_10
CC_CCAAGG_CCAATTGG___GG
22._BE_10
CC_CCAAGG_CCAATTGG___GG
23._BE_10
CC_CCAAGG_CCAATTGG___GG
24._BE_10
CC_CCAAGG_CCAATTGG___AA
25._GC-08-90-2-13
GGAAGGAAGGGGCCAAAACCGG___
 7172737475767778798081828384
_Input profile
CCAACCAAAACCGGCCTTAATTTTTTTT
1._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
2._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
3._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
4._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
5._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
6._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
7._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
8._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
9._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
10._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
11._GC-08-090-2-13
CCAACCAAAACCGGCCTTAATTTTTTTT
12._BE_10
_____CCGG___TTTTTT_
13._BE_10
_____CCGG___TTTTTT_
14._BE_10
_____CCGG___TTTTTT_
15._BE_10
_____CCGG___TTTTTT_
16._BE_10
_____CCGG___TTTTTT_
17._BE_10
_____CCGG___TTTTTT_
18._BE_10
_____CCGG___TTTTTT_
19._BE_10
_____CCGG___TTTTTT_
20._BE_10
_____CCGG___TTTTTT_
21._BE_10
_____CCGG___TTTTTT_
22._BE_10
_____CCGG___TTTTTT_
23._BE_10
_____CCGG___TTTTTT_
24._BE_10
______GG___TTTTTT_
25._GC-08-90-2-13
CCAACCAA_CCCCGGTTAAAAAA_AA
 85868788899091       
_Input profile
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
9._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
10._GC-08-090-2-13
AATTCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
11._GC-08-090-2-13
AATTCC_TTAAGGX_XX_XX_XX_XX_XX_XX_X
12._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
13._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
14._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
15._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
16._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
17._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
18._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
19._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
20._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
21._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
22._BE_10
AA_CCTTTT__X_XX_XX_XX_XX_XX_XX_X
23._BE_10
AA_CC_TT__X_XX_XX_XX_XX_XX_XX_X
24._BE_10
AA__TT___X_XX_XX_XX_XX_XX_XX_X
25._GC-08-90-2-13
__GGAAAATTGGX_XX_XX_XX_XX_XX_XX_X

Input profile: BE_10 GC-08-090-2-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._BE_10 GC-08-090-2-13

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._BE_10 GC-08-090-2-13

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 6
 Dapeng Zhang, 2016

13._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 7
 Dapeng Zhang, 2016

15._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 8
 Dapeng Zhang, 2016

16._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 9
 Dapeng Zhang, 2016

17._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 11
 Dapeng Zhang, 2016

18._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 13
 Dapeng Zhang, 2016

19._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 14
 Dapeng Zhang, 2016

20._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 1 > FP
 Dapeng Zhang, 2016

21._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 3 > FP
 Dapeng Zhang, 2016

22._BE_10

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 4 > FP
 Dapeng Zhang, 2016

23._BE_10

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8213 2 > FP
 Dapeng Zhang, 2016

24._BE_10

97 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/467 T1
 Dapeng Zhang, 2016

25._BE_10 GC-08-90-2-13

48.7 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership - Sample
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71Tcm003s01336581 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240